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CPU Wait issue caused somehow probably by MySQL and possibly related to max_allowed_packet issue

cpu wait is ridiculously high with nothing but mysql running (with the server actually serving, it was 90+% consistently).

top - 05:52:29 up 3 min, 1 user, load average: 0.84, 0.53, 0.22
Tasks: 69 total, 1 running, 68 sleeping, 0 stopped, 0 zombie
Cpu(s): 4.4%us, 1.1%sy, 0.0%ni, 47.8%id, 46.5%wa, 0.2%hi, 0.0%si, 0.0%st
Mem: 1035172k total, 1019344k used, 15828k free, 78404k buffers
Swap: 2650684k total, 552k used, 2650132k free, 712048k cached

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